- Basic information
- CohesinDB ID: CDBP00413154
- Locus: chr21-13846679-13847686
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Data sourse: GSE143937, GSE67783, ENCSR000BKV, GSE72082, GSE86191, GSE116868, ENCSR153HNT, ENCSR703TNG, GSE25021
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Cell type: MCF-7, HCT-116, MB157, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 72%,
"9_Het": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: REST
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: Serum_immune_biomarker_levels
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops