- Basic information
- CohesinDB ID: CDBP00413164
- Locus: chr21-13896540-13897196
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Data sourse: ENCSR000BTQ, ENCSR853VWZ, GSE206145-GSE177045, GSE67783, GSE72082, ENCSR193NSH, ENCSR768DOX, ENCSR760NPX, ENCSR247LSH, ENCSR807WAC, ENCSR767DFK, ENCSR703TNG, GSE25021, ENCSR748MVX
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Cell type: MCF-7, A-549, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SMC3,Rad21,SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 74%,
"9_Het": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, FOXA2, SIN3A, FOXA1, PBX2, CREBBP, GATA4, RAD21, ARNT, GATA3, MAX, NR3C1, CEBPB, NR2F2, TFAP2C, ESR1, GRHL2, EP300, AR, GATA6, HDAC2, CTBP2, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 11
- Related genes and loops