- Basic information
- CohesinDB ID: CDBP00413185
- Locus: chr21-14026851-14028433
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE104888, ENCSR230ZWH, GSE72082, GSE126634, GSE116868, ENCSR000BLY, ENCSR404BPV, GSE105028, GSE111537, GSE25021, GSE108869, ENCSR917QNE, ENCSR000EFJ, GSE165895, GSE93080, ENCSR000EAC, ENCSR000DZP, GSE67783, ENCSR000BKV, GSE122299, GSE138405, GSE86191, GSE152721, GSE206145-NatGen2015, ENCSR198ZYJ, GSE130135, ENCSR703TNG, GSE116344, ENCSR338DUC, ENCSR000EHW, GSE206145, GSE62063, ENCSR000EHX, GSE38395, GSE111913, ENCSR054FKH, ENCSR000EDE, ENCSR153HNT, GSE83726, GSE126990, GSE50893, ENCSR000ECS, GSE64758, GSE38411
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Cell type: RH4, Liver, H9-hESC, RPE, Fibroblast, HeLa-S3, hLCL, GM2255, IMR-90, BCBL-1, K-562, HFFc6, GM18526, H1-hESC, SNYDER, MB157, GM12878, SK-N-SH, RT-112, HAP1, Ramos, MCF-7, Hela-Kyoto, HCT-116, HEK293T, Hep-G2, Neurons-H1, OCI-AML-3, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 18% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.667
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 47%,
"1_TssA": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, RBFOX2, PBX2, CDK9, TBP, ERG, NOTCH1, HIF1A, GABPA, NFYA, MAX, TP63, PBX3, FOS, RCOR1, ELF1, PHF8, SP1, TAF1, HDAC2, E2F6, FLI1, E2F4, MXI1, E2F1, NFYB, TFAP2C
- Target gene symbol (double-evidenced CRMs): HSPA13,RBM11
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 9
- Related genes and loops