- Basic information
- CohesinDB ID: CDBP00413188
- Locus: chr21-14047133-14047213
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Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 76%,
"9_Het": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GATA6, TRIM28, ARNT, FOXA1, PAX5, AHR
- Target gene symbol (double-evidenced CRMs): HSPA13,RBM11
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000185272,
ENSG00000155304,
- Related loop:
chr21:13500000-13525000~~chr21:14050000-14075000,
chr21:13800000-13825000~~chr21:14025000-14050000,
chr21:13875000-13900000~~chr21:14050000-14075000,
chr21:14025000-14050000~~chr21:14125000-14150000,
chr21:14025000-14050000~~chr21:14225000-14250000,
chr21:14025000-14050000~~chr21:14375000-14400000,
chr21:14050000-14075000~~chr21:14475000-14500000,
chr21:6875000-6900000~~chr21:14050000-14075000,