- Basic information
- CohesinDB ID: CDBP00413190
- Locus: chr21-14055484-14059912
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Data sourse: ENCSR000BLD, ENCSR000BTQ, GSE67783, GSE72082, GSE86191, GSE111913, GSE206145, GSE206145-NatGen2015, ENCSR000EDE, ENCSR153HNT, GSE68388, ENCSR703TNG, GSE25021, GSE108869, ENCSR000ECS, GSE38411
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Cell type: MCF-7, H1-hESC, RPE, Fibroblast, HCT-116, HeLa-S3, RT-112, K-562, BCBL-1, HSPC, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS,Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 48%,
"5_TxWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, MYC, MYCN, SP140, NOTCH3, WT1, ZBTB48, BRD4, OCA2, ESR1, CTCF, LEO1
- Target gene symbol (double-evidenced CRMs): SAMSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops