- Basic information
- CohesinDB ID: CDBP00413191
- Locus: chr21-14061942-14065239
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Data sourse: GSE206145-GSE177045, GSE72082, ENCSR000BLY, GSE105028, GSE25021, GSE131606, GSE115602, GSE67783, GSE86191, GSE206145-NatGen2015, ENCSR703TNG, GSE116344, ENCSR000BLS, ENCSR000EHW, GSE206145, ENCSR000EHX, ENCSR000BTQ, GSE111913, GSE155324, GSE83726, GSE50893, GSE38411
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Cell type: MCF-7, RPE, Fibroblast, HCT-116, RH4, Hep-G2, SNYDER, Lymphoblast, DKO, RT-112, SK-N-SH, BCBL-1, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 11% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.844
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 56%,
"5_TxWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, RARA, RXR, TP63, ERG
- Target gene symbol (double-evidenced CRMs): SAMSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 15
- Related genes and loops