- Basic information
- CohesinDB ID: CDBP00413194
- Locus: chr21-14078786-14079337
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Data sourse: GSE206145, GSE67783, GSE86191
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Cell type: RPE, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 50%,
"9_Het": 37%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRP47, MYCN, ZFX, ZBTB48, WT1, ZBTB33, LEO1, ERG, RELA, OGG1, ATF3, SP140, GRHL3, ARNT, CBFB, STAT3, TRIM28, OCA2, CTCF, ZHX2, RXR, HEXIM1, FLI1, BRD4, MBD2, MAZ, AATF
- Target gene symbol (double-evidenced CRMs): NRIP1,USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops
- Related gene:
ENSG00000180530,
ENSG00000155313,
- Related loop:
chr21:13500000-13525000~~chr21:14050000-14075000,
chr21:13875000-13900000~~chr21:14050000-14075000,
chr21:13975000-14000000~~chr21:14075000-14100000,
chr21:14050000-14075000~~chr21:14475000-14500000,
chr21:14075000-14100000~~chr21:15025000-15050000,
chr21:14075000-14100000~~chr21:15725000-15750000,
chr21:14075000-14100000~~chr21:17600000-17625000,
chr21:14075000-14100000~~chr21:17775000-17800000,
chr21:6875000-6900000~~chr21:14050000-14075000,