- Basic information
- CohesinDB ID: CDBP00413196
- Locus: chr21-14083193-14085404
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Data sourse: GSE206145, GSE206145-NatGen2015, GSE67783, GSE86191
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Cell type: RPE, Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"9_Het": 34%,
"15_Quies": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, TRP47, POU2F2, SMC1A, FOXA2, MYCN, POU5F1, ZNF263, ZFX, XBP1, ZBTB48, WT1, ZBTB33, LEO1, CDK9, ERG, YY1, RELA, RARA, OGG1, ATF3, SP140, GRHL3, CBFB, MAF1, PAX5, STAT3, NCAPH2, TP63, AGO2, CEBPB, NCOA3, ELF1, TRIM28, KDM6B, NR2F1, EZH2, ESR1, GRHL2, CTCF, BCL11A, AR, REST, RXR, GATA2, HEXIM1, TFIIIC, HSF1, ZNF674, BRD4, AATF, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): NRIP1,USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops