- Basic information
- CohesinDB ID: CDBP00413202
- Locus: chr21-14097913-14098387
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Data sourse: GSE120943, ENCSR153HNT, GSE98367
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Cell type: K-562, Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 48%,
"4_Tx": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: YBX1, FOXA2, HDAC1, NME2, NBN, ZNF513, HIC1, KDM1A, HDGF, ZNF148, GATA4, ZNF444, GATA1, SUPT5H, ZNF639, BCLAF1, CREB1, IRF5, ARHGAP35, KLF9, ZNF571, TCF12, HES1, E4F1, HDAC2, GATAD2B, CLOCK, EHMT2, ZNF316
- Target gene symbol (double-evidenced CRMs): NRIP1,USP25
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000180530,
ENSG00000155313,
- Related loop:
chr21:13000000-13025000~~chr21:14100000-14125000,
chr21:13450000-13475000~~chr21:14100000-14125000,
chr21:13800000-13825000~~chr21:14100000-14125000,
chr21:13850000-13875000~~chr21:14100000-14125000,
chr21:13875000-13900000~~chr21:14100000-14125000,
chr21:13975000-14000000~~chr21:14075000-14100000,
chr21:14075000-14100000~~chr21:15025000-15050000,
chr21:14075000-14100000~~chr21:15725000-15750000,
chr21:14075000-14100000~~chr21:17600000-17625000,
chr21:14075000-14100000~~chr21:17775000-17800000,
chr21:14100000-14125000~~chr21:14375000-14400000,
chr21:14100000-14125000~~chr21:15150000-15175000,