- Basic information
- CohesinDB ID: CDBP00413203
- Locus: chr21-14114309-14114670
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE111913, GSE76893, GSE105028, ENCSR000ECE, GSE68388
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Cell type: MCF-7, H1-hESC, RT-112, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: Mau2,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 77%,
"9_Het": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF283, RBBP5, FOXA1, LEO1, ERG, KDM1A, YY1, CREBBP, RELA, CHD7, TCF4, HIF1A, ARNT, NKX2-1, GABPA, STAT3, NRIP1, ZNF143, NR3C1, ETV1, PIAS1, KDM5B, ESR1, TP53, GRHL2, SETDB1, BAF155, SP1, AR, EGLN2, ASH2L, BRD4, CTBP2
- Target gene symbol (double-evidenced CRMs): HSPA13
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 9
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155304,
- Related loop:
chr21:13000000-13025000~~chr21:14100000-14125000,
chr21:13450000-13475000~~chr21:14100000-14125000,
chr21:13800000-13825000~~chr21:14100000-14125000,
chr21:13805524-13807565~~chr21:14118402-14121049,
chr21:13806384-13807544~~chr21:14119421-14121216,
chr21:13850000-13875000~~chr21:14100000-14125000,
chr21:13875000-13900000~~chr21:14100000-14125000,
chr21:14100000-14125000~~chr21:14375000-14400000,
chr21:14100000-14125000~~chr21:15150000-15175000,