- Basic information
- CohesinDB ID: CDBP00413206
- Locus: chr21-14130738-14131176
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Data sourse: GSE67783
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Cell type: HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"9_Het": 55%,
"15_Quies": 43%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, EBF1, KDM4C, ZFX, POU4F2, XBP1, ZBTB48, ZSCAN5A, WT1, LEO1, RELA, ARNT, HIF1A, NR3C1, ELF1, EZH2, ESR1, OCA2, SETDB1, CTCF, JUN, PAX3-FOXO1, AR, NOTCH3, STAG1
- Target gene symbol (double-evidenced CRMs): RBM11
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 36
- Number of somatic mutations (non-coding): 0
- Related genes and loops