- Basic information
- CohesinDB ID: CDBP00413207
- Locus: chr21-14166686-14167690
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Data sourse: ENCSR000BLD, ENCSR000BTQ, GSE206145-GSE177045, GSE67783, GSE72082, GSE86191, GSE111913, ENCSR000BLS, GSE206145-NatGen2015, ENCSR703TNG, GSE25021, GSE38411
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Cell type: MCF-7, H1-hESC, Fibroblast, HCT-116, Hep-G2, RT-112, BCBL-1, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 82%,
"9_Het": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF394, ZNF283, NANOG, MAFG, ZNF316, GTF2B, MAFF, FOXA1, ERG3, HOXB13, ZFHX2, PRDM10, ERG, ZBTB21, YY1, ZNF384, JUNB, ATF3, MYC, ZNF362, PRDM1, HIF1A, GABPA, TAL1, MAX, TP63, NKX3-1, FOS, MITF, CEBPG, CEBPB, CREB1, PIAS1, ESR1, C11orf30, SETDB1, CTCF, JUN, USF1, MAFK, BRD2, AR, GATA2, EGLN2, ATF7, POU2F3, RAD51, BRD4, JUND, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 33
- Number of somatic mutations (non-coding): 0
- Related genes and loops