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Basic information

CohesinDB ID: CDBP00413211

Locus: chr21-14241467-14241660

Data sourse: GSE206145-GSE177045

Cell type: MCF-7

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Mau2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 37% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 86%, "14_ReprPCWk": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, PGR, SMC1A, CTNNB1, HDAC1, CEBPA, MEIS2, ZFX, TEAD4, FOXA1, PBX2, CDK9, HOXB13, ERG, MYC, ARID1B, GATA3, GABPA, TAL1, SMARCE1, GATA1, CDK8, IKZF1, TEAD1, ELF1, MYB, TRIM28, PIAS1, ESR1, L3MBTL2, SETDB1, EVI1, TRPS1, ELF3, CTCF, SPI1, BAF155, HES1, LMO1, EP300, AR, REST, GATA2, EGLN2, SOX6, BRD4, JUND, ZIM3, ZNF316

Target gene symbol (double-evidenced CRMs): HSPA13,NRIP1,SAMSN1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000155304, ENSG00000155307, ENSG00000180530,

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Deatailed information for cohesin site CDBP00413211