- Basic information
- CohesinDB ID: CDBP00413212
- Locus: chr21-14243210-14243271
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Data sourse: GSE120943
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Cell type: Monocytes
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 88%,
"14_ReprPCWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, GATA2, ZNF479, ESR1, BRD4, OCA2, FOXA1
- Target gene symbol (double-evidenced CRMs): SAMSN1,NRIP1,HSPA13
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155304,
ENSG00000155307,
ENSG00000180530,
- Related loop:
chr21:13800000-13825000~~chr21:14225000-14250000,
chr21:14025000-14050000~~chr21:14225000-14250000,
chr21:14125000-14150000~~chr21:14225000-14250000,
chr21:14225000-14250000~~chr21:14350000-14375000,
chr21:14225000-14250000~~chr21:14375000-14400000,
chr21:14225000-14250000~~chr21:14525000-14550000,
chr21:14225000-14250000~~chr21:14725000-14750000,
chr21:14225000-14250000~~chr21:14750000-14775000,
chr21:14225000-14250000~~chr21:14775000-14800000,
chr21:14225000-14250000~~chr21:14950000-14975000,
chr21:14225000-14250000~~chr21:15150000-15175000,
chr21:14225000-14250000~~chr21:15450000-15475000,
chr21:14225000-14250000~~chr21:15475000-15500000,