- Basic information
- CohesinDB ID: CDBP00413214
- Locus: chr21-14253316-14254447
-
Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE104888, ENCSR230ZWH, ENCSR000FAD, GSE72082, ENCSR000BSB, ENCSR501LQA, GSE126634, ENCSR000EGW, ENCSR000BLY, ENCSR404BPV, ENCSR150EFU, GSE105028, GSE121355, GSE103477, GSE111537, GSE131606, GSE108869, GSE25021, ENCSR917QNE, ENCSR000EFJ, ENCSR000BTU, GSE93080, ENCSR000DZP, ENCSR000EAC, GSE143937, ENCSR000BKV, GSE115250, GSE138405, GSE76893, GSE152721, ENCSR806UKK, GSE135093, GSE120943, ENCSR198ZYJ, GSE51234, GSE112028, GSE130135, ENCSR199XBQ, ENCSR703TNG, GSE116344, GSE138105, GSE145327, ENCSR000EEG, GSE206145-NatGen2015, GSE115248, ENCSR193NSH, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, GSE206145, ENCSR000ECE, GSE62063, ENCSR000BMY, ENCSR000EHX, ENCSR748MVX, ENCSR767DFK, ENCSR495WGO, GSE97394, ENCSR217ELF, ENCSR000BTQ, ENCSR167MTG, ENCSR853VWZ, ENCSR944ZCT, GSE110061, GSE129526, ENCSR000HPG, GSE155324, ENCSR335RKQ, ENCSR000EDE, ENCSR153HNT, GSE126990, GSE50893, GSE126755, ENCSR000ECS
-
Cell type: MDM, RH4, GM10847, GM2610, SLK, GM19240, OCI-AML-3, Liver, GP5d, TC-32, H9-hESC, RPE, GM2630, Fibroblast, Ishikawa, Kelly, GM12890, HeLa-S3, GM2255, IMR-90, K-562, GM18486, DKO, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Lymphoblast, GM12878, GM12891, GM2588, SK-N-SH, GM19239, HeLa-Tet-On, GM19193, HAP1, Macrophage, HUES64, MCF-7, GM12892, Ramos, Hela-Kyoto, HCT-116, THP-1, HEK293T, Hep-G2, Neurons-H1, A-549, GM19238, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 36% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.411
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,SMC3
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 56%,
"14_ReprPCWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NFIA, SOX2, NME2, XBP1, FOXA1, NFIC, PRDM1, ZNF444, SMARCE1, PAX5, ZSCAN4, TEAD1, TRIM28, ESR1, OCA2, CTCF, BAF155, IRF4, RFX5, SMC1, TEAD4, PDX1, POU2F2, POU5F1, DUX4, SRF, NBN, ERG, MYC, HOMEZ, RAD21, GRHL3, GABPA, NKX3-1, CREB1, EZH2, SPI1, MIXL1, IRF1, GATA2, MRTFB, RUNX1, ZNF585A, SMC1A, ZBTB24, NKX2-2, ZNF534, ZFP37, CBX8, TRIM22, ZBTB2, RUNX2, ARNT, NFIB, SUPT5H, FOS, MED1, PIAS1, SMAD1, BCL11A, FOXP1, SMC3, STAG1, FOXA2, GTF2B, FOXF1, ZNF574, CDK9, HOXB13, TARDBP, HIF1A, OTX2, ZNF143, HAND2, TCF7L2, PHOX2B, ELF3, AR, ZNF579, HSF1, RNF2, BRD4, ILF3, ZNF24, AHR
- Target gene symbol (double-evidenced CRMs): HSPA13,USP25,NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155304,
ENSG00000180530,
ENSG00000155313,
- Related loop:
chr21:13800000-13825000~~chr21:14225000-14250000,
chr21:14025000-14050000~~chr21:14225000-14250000,
chr21:14125000-14150000~~chr21:14225000-14250000,
chr21:14225000-14250000~~chr21:14350000-14375000,
chr21:14225000-14250000~~chr21:14375000-14400000,
chr21:14225000-14250000~~chr21:14525000-14550000,
chr21:14225000-14250000~~chr21:14725000-14750000,
chr21:14225000-14250000~~chr21:14750000-14775000,
chr21:14225000-14250000~~chr21:14775000-14800000,
chr21:14225000-14250000~~chr21:14950000-14975000,
chr21:14225000-14250000~~chr21:15150000-15175000,
chr21:14225000-14250000~~chr21:15450000-15475000,
chr21:14225000-14250000~~chr21:15475000-15500000,
chr21:14250000-14275000~~chr21:14375000-14400000,
chr21:14250000-14275000~~chr21:14725000-14750000,
chr21:14250000-14275000~~chr21:14750000-14775000,
chr21:14250000-14275000~~chr21:14850000-14875000,
chr21:14250000-14275000~~chr21:15475000-15500000,
chr21:14250000-14275000~~chr21:15575000-15600000,
chr21:14250000-14275000~~chr21:15825000-15850000,
chr21:14253183-14254696~~chr21:15062247-15066667,
chr21:14258749-14260833~~chr21:14772926-14775113,
chr21:14258819-14260853~~chr21:14861975-14863460,
chr21:14258824-14260829~~chr21:14862240-14865713,
chr21:14258853-14260940~~chr21:14772935-14775155,
chr21:14258859-14260921~~chr21:14737119-14739132,
chr21:14258927-14260903~~chr21:14737109-14739142,
chr21:14259014-14260613~~chr21:15062794-15066469,
chr21:14259015-14260560~~chr21:14773159-14774697,
chr21:14259018-14260746~~chr21:14772993-14774949,
chr21:14259167-14260586~~chr21:14773118-14774714,
chr21:14259193-14260604~~chr21:14862345-14863646,