Deatailed information for cohesin site CDBP00413220
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00413220
- Locus: chr21-14295215-14295291
- Data sourse: GSE120943, GSE98367
- Cell type: Monocytes, Macrophage
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 90%,
"14_ReprPCWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: BCOR, FOXA1
- Target gene symbol (double-evidenced CRMs): NRIP1,SAMSN1,HSPA13
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene: ENSG00000155304, ENSG00000155307, ENSG00000180530,
- Related loop: chr21:14275000-14300000~~chr21:14375000-14400000, chr21:14275000-14300000~~chr21:14475000-14500000, chr21:14275000-14300000~~chr21:14600000-14625000, chr21:14275000-14300000~~chr21:14725000-14750000, chr21:14275000-14300000~~chr21:14750000-14775000, chr21:14275000-14300000~~chr21:14775000-14800000, chr21:14275000-14300000~~chr21:14850000-14875000, chr21:14275000-14300000~~chr21:14950000-14975000, chr21:14275000-14300000~~chr21:15150000-15175000, chr21:14275000-14300000~~chr21:15475000-15500000, chr21:14275000-14300000~~chr21:15575000-15600000, chr21:14300000-14325000~~chr21:15575000-15600000,
Tools:
- Assay
