- Basic information
- CohesinDB ID: CDBP00413221
- Locus: chr21-14296029-14296203
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Data sourse: GSE72082
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 91%,
"14_ReprPCWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: PHOX2B
- Target gene symbol (double-evidenced CRMs): NRIP1,SAMSN1,HSPA13
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000155304,
ENSG00000155307,
ENSG00000180530,
- Related loop:
chr21:14275000-14300000~~chr21:14375000-14400000,
chr21:14275000-14300000~~chr21:14475000-14500000,
chr21:14275000-14300000~~chr21:14600000-14625000,
chr21:14275000-14300000~~chr21:14725000-14750000,
chr21:14275000-14300000~~chr21:14750000-14775000,
chr21:14275000-14300000~~chr21:14775000-14800000,
chr21:14275000-14300000~~chr21:14850000-14875000,
chr21:14275000-14300000~~chr21:14950000-14975000,
chr21:14275000-14300000~~chr21:15150000-15175000,
chr21:14275000-14300000~~chr21:15475000-15500000,
chr21:14275000-14300000~~chr21:15575000-15600000,
chr21:14300000-14325000~~chr21:15575000-15600000,