- Basic information
- CohesinDB ID: CDBP00413222
- Locus: chr21-14297072-14297309
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Data sourse: GSE111913
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Cell type: RT-112
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1,SA2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 91%,
"14_ReprPCWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, ZNF426, MAFG, TRP47, FOXA2, NANOG, HDAC1, TOP2A, POU5F1, MTA2, ZBTB48, FOXA1, SRF, CBX8, ARID3A, ERG, RELA, ZNF384, SMARCC2, ATF3, MYC, JUNB, SMARCA4, ARID1B, RAD21, SP140, FOXP2, SKIL, GATA3, ZEB2, SMARCE1, TAL1, FOS, GATA1, NFE2, IKZF1, CEBPG, CEBPB, TRIM28, SCRT2, ESR1, PKNOX1, C11orf30, SETDB1, PHOX2B, CTCF, JUN, ZNF34, EP300, EHF, DPF2, ZBTB40, GATA2, EGLN2, TRIM24, EGR1, FLI1, HSF1, RNF2, JUND, BRD4, SCRT1, MRTFB, TEAD4, ZNF24
- Target gene symbol (double-evidenced CRMs): HSPA13,NRIP1,SAMSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155304,
ENSG00000155307,
ENSG00000180530,
- Related loop:
chr21:14275000-14300000~~chr21:14375000-14400000,
chr21:14275000-14300000~~chr21:14475000-14500000,
chr21:14275000-14300000~~chr21:14600000-14625000,
chr21:14275000-14300000~~chr21:14725000-14750000,
chr21:14275000-14300000~~chr21:14750000-14775000,
chr21:14275000-14300000~~chr21:14775000-14800000,
chr21:14275000-14300000~~chr21:14850000-14875000,
chr21:14275000-14300000~~chr21:14950000-14975000,
chr21:14275000-14300000~~chr21:15150000-15175000,
chr21:14275000-14300000~~chr21:15475000-15500000,
chr21:14275000-14300000~~chr21:15575000-15600000,
chr21:14300000-14325000~~chr21:15575000-15600000,