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Basic information

CohesinDB ID: CDBP00413222

Locus: chr21-14297072-14297309

Data sourse: GSE111913

Cell type: RT-112

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: SA1,SA2,SMC1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 46% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 91%, "14_ReprPCWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOSL1, ZNF426, MAFG, TRP47, FOXA2, NANOG, HDAC1, TOP2A, POU5F1, MTA2, ZBTB48, FOXA1, SRF, CBX8, ARID3A, ERG, RELA, ZNF384, SMARCC2, ATF3, MYC, JUNB, SMARCA4, ARID1B, RAD21, SP140, FOXP2, SKIL, GATA3, ZEB2, SMARCE1, TAL1, FOS, GATA1, NFE2, IKZF1, CEBPG, CEBPB, TRIM28, SCRT2, ESR1, PKNOX1, C11orf30, SETDB1, PHOX2B, CTCF, JUN, ZNF34, EP300, EHF, DPF2, ZBTB40, GATA2, EGLN2, TRIM24, EGR1, FLI1, HSF1, RNF2, JUND, BRD4, SCRT1, MRTFB, TEAD4, ZNF24

Target gene symbol (double-evidenced CRMs): HSPA13,NRIP1,SAMSN1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000155304, ENSG00000155307, ENSG00000180530,

Tools:

Assay

refGene

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Cohesin site CDBP00413222

CDBP00413222 regulated genes

Related cohesin loop

Deatailed information for cohesin site CDBP00413222

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