- Basic information
- CohesinDB ID: CDBP00413228
- Locus: chr21-14320860-14321374
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Data sourse: GSE138405, GSE111537, ENCSR000EDE, GSE68388
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Cell type: HeLa-S3, Hela-Kyoto, OCI-AML-3, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 79%,
"14_ReprPCWk": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOSL1, TOP2A, SMAD3, FOXF1, FOXA1, PBX2, ZNF318, JUNB, ATF3, SMARCA4, ARID1B, HIF1A, GATA3, SMARCE1, MAX, STAT3, PBX3, FOS, IKZF1, CDK8, CEBPB, GFI1B, TEAD1, ETV1, GRHL2, STAT5A, JUN, ELF3, TCF12, CTCF, AR, IRF1, REST, SOX6, RNF2, JUND, TCF3, ZNF440, TEAD4, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops