- Basic information
- CohesinDB ID: CDBP00413234
- Locus: chr21-14362949-14363444
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Data sourse: GSE206145-NatGen2015, GSE111913, ENCSR153HNT
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Cell type: K-562, Fibroblast, RT-112
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 79%,
"14_ReprPCWk": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, CEBPG, PGR, CEBPB, CEBPD, SP140, ZFP36, NOTCH3, BRD4, ZNF708, FOXA1, GATA3, NKX3-1, BAF155, ZNF736
- Target gene symbol (double-evidenced CRMs): RBM11
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops