- Basic information
- CohesinDB ID: CDBP00413240
- Locus: chr21-14402984-14405552
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, ENCSR000EEG, ENCSR338DUC, GSE115248, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, ENCSR335RKQ, ENCSR000EDE, GSE50893, GSE206145-GSE177045, GSE72082, ENCSR501LQA, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ENCSR981FDC, ENCSR807WAC, GSE62063, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: MDM, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, OCI-AML-3, CVI-hiPSC, Liver, GP5d, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, Kelly, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Leukemia-SEM, Lymphoblast, GM12878, GM12891, GM2588, GBM39, SK-N-SH, GM19239, HeLa-Tet-On, GM19193, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, A-549, HUVEC, HCAEC, Ramos, GM19238, HeLa, CNCC-WT33iPSC, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 69% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.222
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 94%,
"14_ReprPCWk": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, ZNF384, PGR, GATA2, OTX2, FOXA1, FOXP1, TRPS1, BAF155
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 18
- Related genes and loops
- Related gene:
ENSG00000180530,
- Related loop:
chr21:13800000-13825000~~chr21:14375000-14400000,
chr21:14025000-14050000~~chr21:14375000-14400000,
chr21:14100000-14125000~~chr21:14375000-14400000,
chr21:14225000-14250000~~chr21:14375000-14400000,
chr21:14250000-14275000~~chr21:14375000-14400000,
chr21:14275000-14300000~~chr21:14375000-14400000,
chr21:14375000-14400000~~chr21:14500000-14525000,
chr21:14375000-14400000~~chr21:14750000-14775000,
chr21:14375000-14400000~~chr21:14775000-14800000,
chr21:14375000-14400000~~chr21:14825000-14850000,
chr21:14375000-14400000~~chr21:14850000-14875000,
chr21:14375000-14400000~~chr21:14950000-14975000,
chr21:14375000-14400000~~chr21:15050000-15075000,
chr21:14375000-14400000~~chr21:15075000-15100000,
chr21:14375000-14400000~~chr21:15150000-15175000,
chr21:14375000-14400000~~chr21:15475000-15500000,
chr21:14375000-14400000~~chr21:15575000-15600000,
chr21:14375000-14400000~~chr21:15725000-15750000,
chr21:14375000-14400000~~chr21:15800000-15825000,
chr21:14375000-14400000~~chr21:15825000-15850000,
chr21:14375000-14400000~~chr21:15875000-15900000,
chr21:14375000-14400000~~chr21:15950000-15975000,
chr21:14375000-14400000~~chr21:16050000-16075000,
chr21:14375000-14400000~~chr21:16175000-16200000,
chr21:14375000-14400000~~chr21:17600000-17625000,
chr21:14375000-14400000~~chr21:17775000-17800000,
chr21:14400000-14425000~~chr21:14725000-14750000,
chr21:14400000-14425000~~chr21:14750000-14775000,
chr21:14400000-14425000~~chr21:14825000-14850000,
chr21:14400000-14425000~~chr21:14850000-14875000,
chr21:14400000-14425000~~chr21:15050000-15075000,
chr21:14400000-14425000~~chr21:15450000-15475000,
chr21:14400000-14425000~~chr21:15475000-15500000,
chr21:14400000-14425000~~chr21:15550000-15575000,
chr21:14400000-14425000~~chr21:15575000-15600000,
chr21:14402770-14404843~~chr21:14772812-14775179,
chr21:14402932-14405936~~chr21:14735705-14739152,
chr21:14402932-14405936~~chr21:14773021-14775193,
chr21:14402936-14405485~~chr21:14772789-14774940,
chr21:14402952-14404908~~chr21:14772776-14775120,
chr21:14402952-14404908~~chr21:14862143-14865717,
chr21:14402961-14404887~~chr21:14737067-14739048,
chr21:14402971-14405991~~chr21:14736647-14739145,
chr21:14402973-14404590~~chr21:14736816-14738836,
chr21:14402973-14404590~~chr21:14772993-14774949,
chr21:14402973-14404590~~chr21:14862220-14865605,
chr21:14402974-14404611~~chr21:14735750-14739172,
chr21:14402974-14404642~~chr21:14773012-14775439,
chr21:14402986-14404852~~chr21:14772857-14774887,
chr21:14402992-14404556~~chr21:14737054-14738825,
chr21:14403011-14404675~~chr21:14773028-14775060,
chr21:14403018-14404865~~chr21:14737066-14739103,
chr21:14403147-14404634~~chr21:14862345-14863683,
chr21:14403161-14404630~~chr21:14773091-14774634,
chr21:14403161-14404630~~chr21:14862380-14863635,
chr21:14403192-14404609~~chr21:14773055-14774876,
chr21:14403225-14404622~~chr21:14862401-14863579,