- Basic information
- CohesinDB ID: CDBP00413241
- Locus: chr21-14416188-14417646
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Data sourse: GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 49%,
"9_Het": 41%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, CHD8, CBX5, TBL1X, MYCN, ZNF263, POU5F1, FOXA2, ZFX, POU4F2, CRY1, CBX3, ZBTB48, WT1, MAFF, DUX4, TET2, CDK9, ERG, YY1, RELA, ATF3, MYC, CDK6, THAP1, SP140, ARNT, GRHL3, ZEB2, TP63, ZNF143, HNRNPH1, MED1, ARNTL, NCOA3, TRIM28, ZNF791, PIAS1, EZH2, ESR1, OCA2, SETDB1, CTCF, JUN, MAFK, SPI1, ARRB1, GSPT2, AR, IRF4, TRIM24, NOTCH3, BRD4, ZNF410, MAZ, AATF, SMC3, STAG1, TFAP2C, EED
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 10
- Related genes and loops
- Related gene:
ENSG00000180530,
- Related loop:
chr21:14400000-14425000~~chr21:14725000-14750000,
chr21:14400000-14425000~~chr21:14750000-14775000,
chr21:14400000-14425000~~chr21:14825000-14850000,
chr21:14400000-14425000~~chr21:14850000-14875000,
chr21:14400000-14425000~~chr21:15050000-15075000,
chr21:14400000-14425000~~chr21:15450000-15475000,
chr21:14400000-14425000~~chr21:15475000-15500000,
chr21:14400000-14425000~~chr21:15550000-15575000,
chr21:14400000-14425000~~chr21:15575000-15600000,