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Basic information

CohesinDB ID: CDBP00413246

Locus: chr21-14448241-14448656

Data sourse: ENCSR000BTQ, GSE72082, GSE98367, ENCSR879KXD, ENCSR703TNG, GSE25021, GSE50893

Cell type: MCF-7, GM12892, SNYDER, GM2588, GM12891, GM19238, GM2255, K-562, Macrophage

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 4% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.900

Subunit: SA1,Rad21,SMC1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 46% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 94%, "14_ReprPCWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RELA, CEBPB, SMC1A, FOXA2, MYB, RAD21, DUX4, ATF2, GATA3, CBX8, PHOX2B, CTCF, SPI1, PRDM10

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 2

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00413246