- Basic information
- CohesinDB ID: CDBP00413247
- Locus: chr21-14451676-14455243
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Data sourse: GSE38395, GSE93080, ENCSR000EAC, ENCSR000DZP, GSE155324, ENCSR879KXD, GSE206145, ENCSR000BMY, ENCSR153HNT, GSE50893, GSE73207
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Cell type: GM2610, GM19240, B-cell, GM2630, hLCL, GM2255, K-562, GM18486, SNYDER, GM18505, Lymphoblast, TF-1, GM12878, GM12891, GM2588, GM19239, GM19193, GM12892, GM19238
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 8% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.789
- Subunit: NIPBL,SA1,Rad21,SMC1,Mau2,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 72%,
"7_Enh": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, CBX5, HMGN3, MEIS2, FOXA1, RBFOX2, PBX2, HDGF, TSC22D4, ZNF90, ATF3, NFIC, BMI1, RUNX3, CBFB, MECOM, SMARCE1, PAX5, MITF, HDAC3, MAF, ELF1, BCLAF1, TRIM28, NFE2L2, SMAD5, ZNF217, ESR1, USF2, CTCF, TCF12, JUN, EP300, E4F1, ARID5B, MNT, LMO1, GATA6, PYGO2, DPF2, KLF1, TRIM24, IRF4, SOX6, CREB3, RAD51, E2F1, TEAD4, GTF2F1, EHMT2, PDX1, EED, GATAD2A, POU2F2, TOP2A, ID3, CTBP1, MTA2, STAT1, NONO, NBN, ARID3A, PHB2, TBP, PAX6, ERG, MIER1, SMARCC2, MYC, SMARCA4, ARID1B, RAD21, FOXK2, GABPA, STAT3, IKZF1, LEF1, RCOR1, NR2F6, NFRKB, VDR, NFE2, ESRRA, CEBPB, KMT2A, CREB1, TBL1XR1, GRHL2, ELF4, SPI1, HES1, HDAC2, GATA2, ZNF644, GATAD2B, ZSCAN29, FLI1, SREBF1, DRAP1, RELB, HEXIM1-CDK9, EP400, ATF1, CC2D1A, RUNX1, SMC1A, HDAC1, EZH2phosphoT487, CEBPA, SIRT6, ZFX, ERG3, TRIM22, ZMIZ1, ZNF18, NSD2, PRDM10, MEF2A, ZBTB2, ZNF384, BRD9, ARNT, BACH1, ATF2, ZEB2, HMBOX1, ETV6, CBFA2T3, FOXM1, PBX3, SMARCB1, FOS, NR2C1, MED1, GMEB1, PML, CEBPD, MYB, SMAD1, TAF7, NCOA1, L3MBTL2, C11orf30, SETDB1, EVI1, STAT5A, KLF16, USF1, BCL11A, SP1, NIPBL, REST, ZBTB7A, CCNT2, ATF7, ASH2L, AFF1, TCF3, MBD2, BCOR, STAT2, MLLT1, NFATC3, SKI, CBFA2T2, MEF2B, ZNF207, MTA3, EBF1, CREM, CHD2, E2F8, NFATC1, CBX3, ZBED1, RBBP5, MEF2C, TCF7, CDK9, HOXB13, BCL3, KDM1A, YY1, RELA, TARDBP, JUNB, AHR, NEUROD1, CHAMP1, ISL1, SKIL, GATA3, BATF, TAL1, MAX, GATA1, MTA1, HAND2, ZNF592, GFI1B, NR2F2, ZNF512, NR2F1, ZNF687, PKNOX1, TP53, TBX21, BHLHE40, AR, TAF1, ZBTB16, ZBTB40, EGR1, MYNN, RNF2, IKZF2, BRD4, NCOR1, JUND, ILF3, CUX1, NOTCH3, CLOCK, MAZ, MEF2D, ZNF24, ZNF316
- Target gene symbol (double-evidenced CRMs): SAMSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 19
- Related genes and loops
- Related gene:
ENSG00000155307,
- Related loop:
chr21:14425000-14450000~~chr21:14725000-14750000,
chr21:14425000-14450000~~chr21:14750000-14775000,
chr21:14425000-14450000~~chr21:14775000-14800000,
chr21:14425000-14450000~~chr21:14850000-14875000,
chr21:14425000-14450000~~chr21:15475000-15500000,
chr21:14425000-14450000~~chr21:15550000-15575000,
chr21:14425000-14450000~~chr21:15575000-15600000,
chr21:14450000-14475000~~chr21:14600000-14625000,
chr21:14450000-14475000~~chr21:14700000-14725000,
chr21:14450000-14475000~~chr21:14725000-14750000,
chr21:14450000-14475000~~chr21:14750000-14775000,
chr21:14450000-14475000~~chr21:14775000-14800000,
chr21:14450000-14475000~~chr21:15150000-15175000,
chr21:14450000-14475000~~chr21:15475000-15500000,
chr21:14450000-14475000~~chr21:15575000-15600000,
chr21:14452517-14455663~~chr21:14735673-14739089,
chr21:14452523-14455437~~chr21:14735705-14739152,