- Basic information
- CohesinDB ID: CDBP00413252
- Locus: chr21-14493049-14494367
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Data sourse: GSE120943, ENCSR153HNT, ENCSR879KXD, GSE98367
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Cell type: K-562, Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 56%,
"5_TxWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, SOX2, XBP1, FOXA1, SUZ12, PBX2, HDGF, LYL1, ATF3, NFIC, RUNX3, CBFB, SMARCE1, JMJD1C, TRIM28, BCLAF1, LMO2, JUN, TCF12, CTCF, EP300, KLF1, DPF2, SOX6, E2F1, TEAD4, EED, POU2F2, MYCN, POU5F1, TOP2A, CTBP1, DUX4, ZBTB48, ERG, MYC, SMARCA4, EOMES, ARID1B, GRHL3, NKX2-1, GABPA, IKZF1, RCOR1, NR3C1, EZH2, GRHL2, GABPB1, SPI1, HDAC2, GATA2, FLI1, RELB, RUNX1, SMC1A, HDAC1, CEBPA, SIN3A, ZFX, TET2, ARNT, ATF2, HMBOX1, FOXM1, CBFA2T3, SUPT5H, CDK8, PML, CEBPD, MYB, ZMYM3, EVI1, SETDB1, RBM22, ZBTB7A, RBM25, CCNT2, ATF7, BCOR, TCF3, SMC3, NCOR2, MLLT1, CBFA2T2, FOXA2, EBF1, NFATC1, E2F8, GTF2B, WT1, ZBTB33, HOXB13, KDM1A, RELA, AHR, ISL1, SP140, HIF1A, GATA3, TAL1, MAX, GATA1, HAND2, ZNF592, GFI1B, PKNOX1, PHOX2B, AR, EGLN2, HSF1, NCOR1, NOTCH3, BRD4, JUND, ILF3, MYNN, TBX2, ZNF316
- Target gene symbol (double-evidenced CRMs): SAMSN1,NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 55
- Number of somatic mutations (non-coding): 11
- Related genes and loops