- Basic information
- CohesinDB ID: CDBP00413253
- Locus: chr21-14495023-14495539
-
Data sourse: ENCSR879KXD, GSE98367
-
Cell type: K-562, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
46% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 65%,
"4_Tx": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: CBFA2T2, FOXA2, LDB1, TOP2A, MEIS2, DUX4, ZBTB48, WT1, FOXA1, ZBTB33, HOXB13, HDGF, USP7, ATF3, NFIC, MYC, ARID1B, SP140, ATF4, FOXK2, GABPA, TAL1, FOXM1, CBFA2T3, STAT3, GATA1, SUPT5H, TP63, CEBPG, CEBPB, PML, CEBPD, KMT2A, PKNOX1, ZIM3, C11orf30, TCF12, RBM22, EP300, BCL11A, MAFK, AR, DPF2, GATA2, ZBTB7A, RBM25, ZNF777, NCOR1, DDX20, BRD4, TEAD4, ADNP, ZNF316
- Target gene symbol (double-evidenced CRMs): SAMSN1,NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000155307,
ENSG00000180530,
- Related loop:
chr21:14050000-14075000~~chr21:14475000-14500000,
chr21:14275000-14300000~~chr21:14475000-14500000,
chr21:14375000-14400000~~chr21:14500000-14525000,
chr21:14475000-14500000~~chr21:14675000-14700000,
chr21:14475000-14500000~~chr21:14725000-14750000,
chr21:14475000-14500000~~chr21:14825000-14850000,
chr21:14475000-14500000~~chr21:14950000-14975000,
chr21:14500000-14525000~~chr21:14600000-14625000,
chr21:14500000-14525000~~chr21:14725000-14750000,
chr21:14500000-14525000~~chr21:14825000-14850000,
chr21:14500000-14525000~~chr21:15150000-15175000,