- Basic information
- CohesinDB ID: CDBP00413255
- Locus: chr21-14508533-14509068
-
Data sourse: GSE120943, GSE67783, GSE98367
-
Cell type: Monocytes, HSPC, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 65%,
"5_TxWk": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: SOX2, NME2, XBP1, FOXA1, PBX2, TFAP4, HDGF, MEN1, LYL1, NFIC, HNRNPUL1, RUNX3, PRDM1, MECOM, SMARCE1, PAX5, BACH2, JMJD1C, MAF, THRAP3, TRIM28, BCLAF1, RBM39, LMO2, SMAD5, OCA2, MLL, ESR1, JUN, TCF12, CTCF, EP300, ARID5B, PAX8, DPF2, TRIM24, IRF4, SOX6, TEAD4, KMT2B, RBPJ, EED, POU2F2, CHD8, TOP2A, ID3, RUNX1T1, MTA2, ZBTB48, STAT1, ERG, MIER1, OGG1, MYC, ONECUT1, SMARCA4, ZNF24, RAD21, GRHL3, GABPA, STAT3, IKZF1, NFE2, TERF2, VDR, NR3C1, CEBPB, STAT5B, KMT2A, EZH2, ARHGAP35, FEZF1, SPI1, IRF1, GATA2, GATAD2B, FLI1, SMARCA5, RELB, CC2D1A, RUNX1, SMC1A, CEBPA, NKX2-2, SIN3A, ZFX, POU4F2, AFF4, PALB2, TRIM22, MEF2A, CREBBP, NOTCH1, ZNF184, ARNT, PBX4, SOX11, ATF2, PBX3, ETV6, FOXM1, SUPT5H, CDK8, FOS, MED1, PML, CEBPD, MYB, TERF1, ZMYM3, C11orf30, SETDB1, EVI1, STAT5A, RBM22, MAFK, BCL11A, SP1, NIPBL, NR4A1, REST, CCNT2, RBM25, POU2F3, ATF7, ASH2L, BCOR, FOXP1, TCF3, NCOR2, MLLT1, NFATC3, SKI, MEF2B, FOXA2, MTA3, EBF1, NFATC1, E2F8, ZBED1, GTF2B, WT1, ZBTB33, MEF2C, CDK9, HOXB13, KDM1A, RELA, ZNF441, TARDBP, JUNB, AHR, ZNF830, HIF1A, SKIL, GATA3, BATF, TAL1, MAX, SPIB, GATA1, ZNF143, CEBPG, NCOA3, NR2F1, TP53, PKNOX1, PHOX2B, TBX21, AR, PAX3-FOXO1, ZBTB16, RXR, HSF1, NOTCH3, BRD4, ILF3, IKZF2, CLOCK, MAZ, ZZZ3, BRCA1, ZNF316
- Target gene symbol (double-evidenced CRMs): HSPA13,SAMSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 30
- Number of somatic mutations (non-coding): 0
- Related genes and loops