- Basic information
- CohesinDB ID: CDBP00413266
- Locus: chr21-14551605-14552002
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Data sourse: GSE62063, GSE68388
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Cell type: HuCC-T1, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 81%,
"5_TxWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZBTB40, YAP1, TEAD1, NKX2-2, KMT2A, CDK7, TOP2A, ZNF317, GRHL3, BRD4, STAT3, TEAD4, FOS
- Target gene symbol (double-evidenced CRMs): SAMSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155307,
- Related loop:
chr21:14225000-14250000~~chr21:14525000-14550000,
chr21:14525000-14550000~~chr21:14675000-14700000,
chr21:14525000-14550000~~chr21:14725000-14750000,
chr21:14525000-14550000~~chr21:14750000-14775000,
chr21:14525000-14550000~~chr21:15050000-15075000,
chr21:14525000-14550000~~chr21:25450000-25475000,
chr21:14526513-14528106~~chr21:14545508-14547033,
chr21:14545597-14546983~~chr21:14675233-14677002,
chr21:14555961-14558184~~chr21:14685023-14689153,