- Basic information
- CohesinDB ID: CDBP00413268
- Locus: chr21-14559082-14559732
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Data sourse: GSE38395, GSE93080, ENCSR000EAC, ENCSR000DZP, GSE98367, ENCSR000BMY, GSE50893
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Cell type: GM12892, GM2610, GM12878, GM2588, hLCL, GM2255, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SMC3,Rad21,SA1,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 84%,
"9_Het": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, CBX5, FOXA1, HDGF, NFIC, RUNX3, PRDM1, PAX5, BCLAF1, TRIM28, ZNF217, OCA2, USF2, CTCF, SND1, JUN, DPF2, IRF4, RAD51, PDX1, RBPJ, EED, POU2F2, ZSCAN5D, TOP2A, MTA2, DUX4, STAT1, MLLT3, NBN, MYC, RAD21, STAT3, NKX3-1, IKZF1, CD74, CEBPB, KMT2A, SPI1, GATAD2B, SIX2, SMARCA5, RELB, BCL6, SMC1A, CEBPA, NKX2-2, ZFX, POU4F2, TRIM22, CREBBP, ARNT, FOXM1, MYB, SETDB1, USF1, NIPBL, HNF4A, ATF7, POU2F3, BCOR, FOXP1, ILK, MLLT1, PTTG1, NFATC3, MEF2B, EBF1, GTF2B, TCF7, RELA, TARDBP, JUNB, ZFP36, SKIL, BATF, MAX, SPIB, ZNF592, NR2F1, ZNF687, PKNOX1, TBX21, BHLHE40, AR, PTRF, ZBTB40, IKZF2, BRD4, ZNF24
- Target gene symbol (double-evidenced CRMs): SAMSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops