- Basic information
- CohesinDB ID: CDBP00413269
- Locus: chr21-14567228-14570286
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Data sourse: GSE93080, GSE98367, ENCSR879KXD, GSE120943, ENCSR000BMY, GSE103477, GSE50893, GSE126755
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Cell type: MDM, Monocytes, GM12878, GM2255, K-562, Neutrophil, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SMC3,Rad21,SA1,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 79%,
"7_Enh": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFATC3, RUNX1, PGR, SMC1A, PPARG, CEBPA, FOXA2, EBF1, RBPJ, NKX2-2, MTA2, DUX4, STAT1, FOXA1, BCL3, ERG, RELA, TARDBP, JUNB, MYC, NFIC, RUNX3, RAD21, HIF1A, SKIL, CBFB, GATA3, GABPA, STAT3, SPIB, NKX3-1, IKZF1, CDK8, TERF2, FOS, MED1, CDX2, VDR, NR3C1, CEBPB, JMJD1C, NFE2, TERF1, TRIM28, MYB, BCLAF1, KMT2A, ESR1, NFKB1, CTCF, JUN, SPI1, TBX21, AR, IRF1, DPF2, PAX8, RXR, IRF4, ATF7, ASH2L, RAD51, IKZF2, BRD4, SMARCA5, RELB, PDX1, AHR, EED
- Target gene symbol (double-evidenced CRMs): SAMSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 44
- Number of somatic mutations (non-coding): 0
- Related genes and loops