- Basic information
- CohesinDB ID: CDBP00413270
- Locus: chr21-14572129-14572516
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Data sourse: GSE38395, ENCSR879KXD, GSE62063, GSE120943, ENCSR000BMY
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Cell type: Monocytes, GM12878, hLCL, K-562, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: NIPBL,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 91%,
"14_ReprPCWk": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ADNP, MEF2B, CBX1, HDAC1, MTA3, CREM, NFATC1, MTA2, GTF2B, STAT1, MEF2C, NBN, TRIM22, BCL3, KDM1A, MEF2A, RELA, IRF2, TARDBP, YY1, JUNB, ATF3, NFIC, MYC, SMARCA4, RUNX3, RAD21, SKIL, ATF4, ATF2, BATF3, ZEB2, BATF, TAL1, FOXM1, ETV6, GATA1, CDK8, IKZF1, RCOR1, GFI1B, BCLAF1, MYB, CREB1, NR2F1, ZMYM3, ZNF217, MLL, TP73, C11orf30, STAT5A, BCL11A, NIPBL, TBX21, IRF1, HDAC2, GATA2, IRF4, RBM25, ATF7, ASH2L, RNF2, IKZF2, BRD4, BCOR, RELB, ZNF24, MLLT1, RBPJ, EED
- Target gene symbol (double-evidenced CRMs): SAMSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops