- Basic information
- CohesinDB ID: CDBP00413276
- Locus: chr21-14588871-14589251
-
Data sourse: GSE62063
-
Cell type: Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 89%,
"5_TxWk": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NFATC3, CBX5, SMC1A, MEF2B, POU2F2, MYCN, CREM, MTA3, NFATC1, E2F8, ZNF207, MTA2, DUX4, STAT1, TCF7, NBN, TRIM22, TWIST1, HOXC5, MEF2A, RELA, CREBBP, TARDBP, ZBTB2, ZNF384, JUNB, HDGF, MYC, NFIC, SMARCA4, CHAMP1, ARID1B, ISL1, RUNX3, SKIL, GATA3, ATF2, BATF, TAL1, FOXM1, ETV6, GATA1, CDK8, RCOR1, HAND2, MED1, MAF, ELF1, PML, KMT2A, CREB1, MYB, ZMYM3, PKNOX1, CBX1, USF2, STAT5A, PHOX2B, SPI1, NIPBL, TBX21, EP300, BCL11A, IRF1, DPF2, PAX8, ZBTB7A, IRF4, ATF7, ASH2L, RAD51, NOTCH3, BRD4, RELB, TEAD4, MLLT1, RBPJ
- Target gene symbol (double-evidenced CRMs): SAMSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 2
- Related genes and loops