- Basic information
- CohesinDB ID: CDBP00413279
- Locus: chr21-14600620-14601432
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Data sourse: ENCSR879KXD, GSE73207
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Cell type: K-562, TF-1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 77%,
"7_Enh": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, MEIS2, FOXA1, PBX2, LYL1, ATF3, NFIC, ZBTB5, ATF4, SMARCE1, HDAC3, MYOG, TRIM28, NFE2L2, LMO2, CTCF, TCF12, EP300, E4F1, MNT, DPF2, TRIM24, SOX6, DDX20, TEAD4, EHMT2, RUNX1T1, CTBP1, MTA2, STAT1, NBN, ARID3A, ERG, MYC, SMARCA4, ARID1B, GRHL3, STAT3, IKZF1, RCOR1, NFE2, DACH1, CEBPB, STAT5B, TBL1XR1, SPI1, IRF1, HDAC2, GATA2, GATAD2B, TAF9B, EP400, ATF1, CC2D1A, RUNX1, MAFG, HDAC1, LDB1, CEBPA, MYBL2, PRDM9, ZEB2, FOXM1, CBFA2T3, CDK8, GMEB1, PML, MYB, SMAD1, L3MBTL2, EVI1, STAT5A, KLF16, BCL11A, ZBTB7A, CCNT2, AFF1, STAT2, MLLT1, CBFA2T2, FOXA2, MTA3, MEIS1, E2F8, CDK9, ZNF318, KDM1A, RELA, CHAMP1, GATA3, TAL1, GATA1, MTA1, CEBPG, ZNF592, TCF7L2, NR2F1, PKNOX1, PHOX2B, AR, ZBTB16, ZBTB40, HSF1, NCOR1, NOTCH3, BRD4, RNF2, JUND, ZNF24
- Target gene symbol (double-evidenced CRMs): SAMSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 5
- Number of somatic mutations (non-coding): 5
- Related genes and loops