- Basic information
- CohesinDB ID: CDBP00413288
- Locus: chr21-14619841-14620940
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Data sourse: GSE93080, GSE98367, GSE62063, GSE120943, GSE111537, GSE50893, GSE126755
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Cell type: GM12892, GM2630, SNYDER, Monocytes, GM2610, GM19240, GM12878, GM12891, GM2588, OCI-AML-3, GM2255, GM19239, Neutrophil, Macrophage, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.833
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 69%,
"9_Het": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFATC3, RUNX1, POU2F2, SMC1A, ZNF316, CEBPA, CBX5, RBPJ, GTF2B, STAT1, ZBTB33, MEF2C, NBN, CDK9, TRIM22, ERG, RELA, TARDBP, EHMT2, MYC, CHAMP1, RUNX3, PRDM1, GRHL3, SKIL, RAD21, BATF, ETV6, PAX5, SPIB, ZNF143, IKZF1, CDK8, NFE2, VDR, JMJD1C, TRIM28, ESR1, CTCF, SPI1, NIPBL, TBX21, DPF2, ZBTB16, GATA2, TRIM24, IRF4, EGR1, ATF7, FLI1, RAD51, IKZF2, BRD4, RELB, MLLT1, CC2D1A, EED
- Target gene symbol (double-evidenced CRMs): SAMSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 8
- Related genes and loops