- Basic information
- CohesinDB ID: CDBP00413290
- Locus: chr21-14630479-14630830
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Data sourse: GSE38395, GSE93080, ENCSR000DZP, ENCSR000BKV, GSE98367, GSE62063, ENCSR000BMY
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Cell type: GM12878, hLCL, K-562, Macrophage, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: NIPBL,SMC3,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 89%,
"7_Enh": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, SOX2, MEIS2, HMGN3, FOXA1, PBX2, ATF3, NFIC, RUNX3, SMARCE1, CDX2, MAF, JMJD1C, TRIM28, ETV1, NFE2L2, ZNF217, OCA2, JUN, TCF12, EP300, E4F1, LMO1, DPF2, TRIM24, IRF4, SOX6, CREB3, RAD51, E2F1, TEAD4, ZNF175, PDX1, EHMT2, POU2F2, POU5F1, RUNX1T1, CTBP1, MTA2, ARID3A, ERG, SMARCC2, MYC, SMARCA4, ARID1B, RAD21, GRHL3, BATF3, GABPA, NKX3-1, LEF1, RCOR1, DACH1, NR2F6, NFE2, CEBPB, ESRRA, STAT5B, ZBTB11, TBL1XR1, EZH2, SPI1, HDAC2, GATA2, FLI1, RELB, ATF1, SMC1A, HDAC1, NKX2-2, LDB1, CEBPA, ZMIZ1, SMARCC1, ZNF384, NOTCH1, OSR2, PBX4, ATF2, ZEB2, HMBOX1, CBFA2T3, FOXM1, FOS, CDK8, MED1, GMEB1, PML, CEBPD, MYB, ZMYM3, SMAD1, NCOA1, ZNF41, STAT5A, KLF16, NUP98-HOXA9, NIPBL, BCL11A, REST, ZBTB7A, RBM25, CCNT2, ATF7, CBFA2T2, FOXA2, CBX3, CREM, GTF2B, HOXB13, ZNF318, KDM1A, ZNF589, RELA, JUNB, CHAMP1, ISL1, GATA3, BATF, TAL1, GATA1, CEBPG, GFI1B, NR2F2, NR2F1, PKNOX1, TBX21, AR, ZBTB40, NCOR1, NOTCH3, BRD4, ILF3, JUND, CLOCK, RNF2, ADNP
- Target gene symbol (double-evidenced CRMs): SAMSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops