- Basic information
- CohesinDB ID: CDBP00413296
- Locus: chr21-14659181-14659672
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Data sourse: ENCSR000EAC, ENCSR000DZP, GSE50893, GSE93080
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Cell type: GM12892, SNYDER, GM2610, GM12878, GM2588, GM19239
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SMC3,Rad21,SA1,SMC1
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 98%,
"14_ReprPCWk": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, FOXA2, NKX2-2, POU5F1, EZH2phosphoT487, FOXA1, CBX8, NEUROD1, SMARCA4, ARNT, OTX2, GABPA, TERF2, ZEB1, MYB, CTCF, AR, DPF2, GATA2, BRD4, TEAD4
- Target gene symbol (double-evidenced CRMs): NRIP1,SAMSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops