- Basic information
- CohesinDB ID: CDBP00413308
- Locus: chr21-14695752-14696224
-
Data sourse: GSE206145-GSE177045
-
Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 95%,
"14_ReprPCWk": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, NFIA, FOXA2, POU5F1, DUX4, FOXA1, ERG, NFIC, MYC, NFIB, HIF1A, GRHL3, ARNT, OTX2, GATA3, STAT3, FOXM1, NR3C1, TEAD1, NR2F2, CREB1, PIAS1, ESR1, GRHL2, BAF155, AR, PAX8, HDAC2, GATA2, BRD4, FOXP1, TFAP2C
- Target gene symbol (double-evidenced CRMs): SAMSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops