- Basic information
- CohesinDB ID: CDBP00413314
- Locus: chr21-14719821-14721121
-
Data sourse: ENCSR198ZYJ, ENCSR404BPV
-
Cell type: Neurons-H1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC3,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 92%,
"14_ReprPCWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, MYCN, POU5F1, MEIS2, DUX4, FOXA1, PBX2, HOXB13, TWIST1, ZNF19, NOTCH1, AHR, SMARCA4, ISL1, PRDM1, RAD21, OTX2, GATA3, GABPA, STAT3, MAX, GATA1, FOS, HAND2, ESRRA, MYB, ZNF573, PKNOX1, ZNF565, MYOD1, PHOX2B, JUN, EP300, SPI1, AR, PAX3-FOXO1, REST, NOTCH3, BRD4, TEAD4, TBX2, PDX1, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 9
- Related genes and loops
- Related gene:
- Related loop:
chr21:14225000-14250000~~chr21:14725000-14750000,
chr21:14250000-14275000~~chr21:14725000-14750000,
chr21:14275000-14300000~~chr21:14725000-14750000,
chr21:14400000-14425000~~chr21:14725000-14750000,
chr21:14425000-14450000~~chr21:14725000-14750000,
chr21:14450000-14475000~~chr21:14700000-14725000,
chr21:14450000-14475000~~chr21:14725000-14750000,
chr21:14475000-14500000~~chr21:14725000-14750000,
chr21:14500000-14525000~~chr21:14725000-14750000,
chr21:14525000-14550000~~chr21:14725000-14750000,
chr21:14600000-14625000~~chr21:14725000-14750000,
chr21:14725000-14750000~~chr21:14850000-14875000,
chr21:14725000-14750000~~chr21:15475000-15500000,
chr21:14725000-14750000~~chr21:15575000-15600000,