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Basic information

CohesinDB ID: CDBP00413315

Locus: chr21-14722832-14723504

Data sourse: GSE93080, ENCSR000EAC, ENCSR000DZP, ENCSR000BMY, GSE97394, GSE50893

Cell type: HUES64, GM12878, GM12891

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 2% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: NIPBL,SA1,Rad21,SMC1,SMC3

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 41% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 90%, "9_Het": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: NFATC3, NANOG, MEF2B, SMC1A, ZNF207, POU5F1, CBX5, POU2F2, EBF1, E2F8, ZNF316, MTA2, ZBED1, TOP2A, FOXA1, TCF7, NBN, TRIM22, ERG, MEF2A, TARDBP, NOTCH1, JUNB, BMI1, MYC, NFIC, CHD7, RUNX3, ARNT, SKIL, RAD21, BACH1, CBFB, ATF2, BATF3, BATF, FOXK2, GATA3, ETV6, PAX5, GABPA, GATA1, IKZF1, MED1, KLF5, ELF1, BCLAF1, TRIM28, STAT5B, MYB, ZNF217, ZNF687, CTCF, TCF12, NIPBL, SPI1, TBX21, BHLHE40, BCL11A, EP300, DPF2, IRF4, GATAD2B, ATF7, RAD51, IKZF2, JUND, SMARCA5, BCOR, NCOR1, RELB, SMC3, ZNF24, MLLT1, TFAP2C, EED

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 4

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00413315