- Basic information
- CohesinDB ID: CDBP00413316
- Locus: chr21-14731536-14731839
-
Data sourse: GSE206145, GSE206145-NatGen2015
-
Cell type: RPE, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 96%,
"14_ReprPCWk": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: AR, CEBPG, CEBPB, FOXA2
- Target gene symbol (double-evidenced CRMs): SAMSN1,RBM11
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000185272,
ENSG00000155307,
- Related loop:
chr21:14225000-14250000~~chr21:14725000-14750000,
chr21:14250000-14275000~~chr21:14725000-14750000,
chr21:14275000-14300000~~chr21:14725000-14750000,
chr21:14400000-14425000~~chr21:14725000-14750000,
chr21:14402932-14405936~~chr21:14735705-14739152,
chr21:14402971-14405991~~chr21:14736647-14739145,
chr21:14402973-14404590~~chr21:14736816-14738836,
chr21:14402974-14404611~~chr21:14735750-14739172,
chr21:14425000-14450000~~chr21:14725000-14750000,
chr21:14450000-14475000~~chr21:14725000-14750000,
chr21:14452517-14455663~~chr21:14735673-14739089,
chr21:14452523-14455437~~chr21:14735705-14739152,
chr21:14475000-14500000~~chr21:14725000-14750000,
chr21:14500000-14525000~~chr21:14725000-14750000,
chr21:14525000-14550000~~chr21:14725000-14750000,
chr21:14600000-14625000~~chr21:14725000-14750000,
chr21:14725000-14750000~~chr21:14850000-14875000,
chr21:14725000-14750000~~chr21:15475000-15500000,
chr21:14725000-14750000~~chr21:15575000-15600000,