- Basic information
- CohesinDB ID: CDBP00413333
- Locus: chr21-14777435-14777640
-
Data sourse: GSE62063
-
Cell type: Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 98%,
"14_ReprPCWk": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZEB1, FOXA2, KAT2B, ONECUT1, PHOX2B
- Target gene symbol (double-evidenced CRMs): HSPA13,NRIP1,SAMSN1,RBM11
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000185272,
ENSG00000155304,
ENSG00000155307,
ENSG00000180530,
- Related loop:
chr21:14225000-14250000~~chr21:14750000-14775000,
chr21:14225000-14250000~~chr21:14775000-14800000,
chr21:14250000-14275000~~chr21:14750000-14775000,
chr21:14258749-14260833~~chr21:14772926-14775113,
chr21:14258853-14260940~~chr21:14772935-14775155,
chr21:14259015-14260560~~chr21:14773159-14774697,
chr21:14259018-14260746~~chr21:14772993-14774949,
chr21:14259167-14260586~~chr21:14773118-14774714,
chr21:14275000-14300000~~chr21:14750000-14775000,
chr21:14275000-14300000~~chr21:14775000-14800000,
chr21:14306031-14307499~~chr21:14772990-14774696,
chr21:14375000-14400000~~chr21:14750000-14775000,
chr21:14375000-14400000~~chr21:14775000-14800000,
chr21:14400000-14425000~~chr21:14750000-14775000,
chr21:14402770-14404843~~chr21:14772812-14775179,
chr21:14402932-14405936~~chr21:14773021-14775193,
chr21:14402936-14405485~~chr21:14772789-14774940,
chr21:14402952-14404908~~chr21:14772776-14775120,
chr21:14402973-14404590~~chr21:14772993-14774949,
chr21:14402974-14404642~~chr21:14773012-14775439,
chr21:14402986-14404852~~chr21:14772857-14774887,
chr21:14403011-14404675~~chr21:14773028-14775060,
chr21:14403161-14404630~~chr21:14773091-14774634,
chr21:14403192-14404609~~chr21:14773055-14774876,
chr21:14425000-14450000~~chr21:14750000-14775000,
chr21:14425000-14450000~~chr21:14775000-14800000,
chr21:14450000-14475000~~chr21:14750000-14775000,
chr21:14450000-14475000~~chr21:14775000-14800000,
chr21:14525000-14550000~~chr21:14750000-14775000,
chr21:14600000-14625000~~chr21:14775000-14800000,
chr21:14750000-14775000~~chr21:14850000-14875000,
chr21:14775000-14800000~~chr21:14950000-14975000,
chr21:14775000-14800000~~chr21:15150000-15175000,
chr21:14775000-14800000~~chr21:15450000-15475000,
chr21:14775000-14800000~~chr21:15575000-15600000,