- Basic information
- CohesinDB ID: CDBP00413335
- Locus: chr21-14789081-14789506
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Data sourse: ENCSR000BLD, GSE86191, GSE105028, GSE68388, GSE97394, GSE50893
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Cell type: H1-hESC, HCT-116, SNYDER, HUES64, GM19239, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 98%,
"9_Het": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, CDX2, RELA, MYC, TRIM28, EOMES, ZNF534, PRDM1, GRHL3, SPI1, ZBTB33, SMC3, CTCF, NIPBL, HNF4A
- Target gene symbol (double-evidenced CRMs): RBM11,NRIP1,SAMSN1,HSPA13
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
ENSG00000185272,
ENSG00000155304,
ENSG00000155307,
ENSG00000180530,
- Related loop:
chr21:14225000-14250000~~chr21:14775000-14800000,
chr21:14275000-14300000~~chr21:14775000-14800000,
chr21:14375000-14400000~~chr21:14775000-14800000,
chr21:14425000-14450000~~chr21:14775000-14800000,
chr21:14450000-14475000~~chr21:14775000-14800000,
chr21:14600000-14625000~~chr21:14775000-14800000,
chr21:14775000-14800000~~chr21:14950000-14975000,
chr21:14775000-14800000~~chr21:15150000-15175000,
chr21:14775000-14800000~~chr21:15450000-15475000,
chr21:14775000-14800000~~chr21:15575000-15600000,