- Basic information
- CohesinDB ID: CDBP00413338
- Locus: chr21-14830221-14830694
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Data sourse: ENCSR000BTQ, ShirahigeLab-GSE177045, GSE72082, GSE76893, ENCSR703TNG, GSE25021
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL,Rad21,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 98%,
"9_Het": 1%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, SOX2, FOXA1, SUZ12, PBX2, ATF3, MECOM, SMARCE1, TEAD1, ETV1, LMO2, ESR1, ZNF217, CTCF, JUN, BAF155, EP300, DPF2, TEAD4, TFAP2C, POU2F2, CHD8, NANOG, POU5F1, TOP2A, RUNX1T1, CTBP1, ZSCAN5A, DDX5, ERG, SMARCA4, RAD21, GRHL3, GABPA, STAT3, NKX3-1, IKZF1, NR3C1, ESRRA, CEBPB, CREB1, GRHL2, HDAC2, GATA2, NCOA2, SIN3A, ZFX, CREBBP, ARNT, ATF2, HMBOX1, FOXM1, FOS, MED1, PIAS1, NCOA1, RBM22, BCL11A, NIPBL, ATF7, CTBP2, FOXP1, ZNF283, FOXA2, CDK9, HOXB13, RELA, HIF1A, OTX2, GATA3, NRIP1, ZNF143, TLE3, KLF4, NR2F2, TCF7L2, KDM5B, TP53, PKNOX1, MYOD1, T, AR, PAX3-FOXO1, NOTCH3, JUND, BRD4, ZNF24, AHR
- Target gene symbol (double-evidenced CRMs): HSPA13,SAMSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000155304,
ENSG00000155307,
- Related loop:
chr21:14375000-14400000~~chr21:14825000-14850000,
chr21:14400000-14425000~~chr21:14825000-14850000,
chr21:14475000-14500000~~chr21:14825000-14850000,
chr21:14500000-14525000~~chr21:14825000-14850000,
chr21:14825000-14850000~~chr21:15475000-15500000,
chr21:14825000-14850000~~chr21:15500000-15525000,
chr21:14825000-14850000~~chr21:15575000-15600000,
chr21:14825021-14827663~~chr21:15552007-15554258,