- Basic information
- CohesinDB ID: CDBP00413340
- Locus: chr21-14841009-14842435
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Data sourse: ENCSR000BLD, GSE67783, GSE86191, GSE206145, ENCSR153HNT, GSE38411
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Cell type: RPE, H1-hESC, HCT-116, K-562, BCBL-1, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 70%,
"9_Het": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF394, TRP47, PGR, CHD8, SMC1A, TBL1X, LDB1, ZNF263, POU5F1, POU2F2, ZFX, NFKBIA, MYCN, KDM4C, ZBTB48, ZSCAN5D, CRY1, FOXF1, FOXA1, TEAD4, ZBTB33, NFXL1, DUX4, CDK9, ERG, KDM1A, RELA, OGG1, ATF3, MYC, SMARCA4, SP140, ARNT, HIF1A, GRHL3, ZNF444, CBFB, GATA3, GABPA, STAT3, MAF1, SMARCB1, AGO2, MITF, ZNF143, HAND2, NR3C1, CEBPB, NCOA3, TEAD1, TRIM28, CREB1, SNAI2, ZNF283, ESR1, OCA2, TP53, CBX1, SETDB1, PHOX2B, CTCF, NANOG, USF1, EP300, AR, FOXA2, RXR, TRIM24, EGLN2, HEXIM1, HSF1, NOTCH3, BRD4, CLOCK, SMC3, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): HSPA13,SAMSN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops