- Basic information
- CohesinDB ID: CDBP00413343
- Locus: chr21-14857468-14857884
-
Data sourse: ENCSR000BLD, GSE152721, GSE98367
-
Cell type: H1-hESC, HAP1, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 83%,
"7_Enh": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: PAX7, NANOG, SMC1A, POU5F1, EBF1, SOX2, POU4F2, STAT1, ZNF485, KDM1A, RELA, MYC, RAD21, CHD7, HMBOX1, PAX5, SP2, GATA1, KLF4, CEBPB, TRIM28, KMT2A, ZMYM3, ESR1, SPI1, AR, PAX3-FOXO1, NCOR1
- Target gene symbol (double-evidenced CRMs): HSPA13,SAMSN1,NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000155304,
ENSG00000155307,
ENSG00000180530,
- Related loop:
chr21:14250000-14275000~~chr21:14850000-14875000,
chr21:14258819-14260853~~chr21:14861975-14863460,
chr21:14258824-14260829~~chr21:14862240-14865713,
chr21:14259193-14260604~~chr21:14862345-14863646,
chr21:14275000-14300000~~chr21:14850000-14875000,
chr21:14375000-14400000~~chr21:14850000-14875000,
chr21:14400000-14425000~~chr21:14850000-14875000,
chr21:14402952-14404908~~chr21:14862143-14865717,
chr21:14402973-14404590~~chr21:14862220-14865605,
chr21:14403147-14404634~~chr21:14862345-14863683,
chr21:14403161-14404630~~chr21:14862380-14863635,
chr21:14403225-14404622~~chr21:14862401-14863579,
chr21:14425000-14450000~~chr21:14850000-14875000,
chr21:14650000-14675000~~chr21:14850000-14875000,
chr21:14725000-14750000~~chr21:14850000-14875000,
chr21:14750000-14775000~~chr21:14850000-14875000,
chr21:14850000-14875000~~chr21:14950000-14975000,
chr21:14850000-14875000~~chr21:14975000-15000000,
chr21:14850000-14875000~~chr21:15025000-15050000,
chr21:14850000-14875000~~chr21:15050000-15075000,
chr21:14850000-14875000~~chr21:15125000-15150000,
chr21:14850000-14875000~~chr21:15150000-15175000,
chr21:14850000-14875000~~chr21:15200000-15225000,
chr21:14850000-14875000~~chr21:15225000-15250000,
chr21:14850000-14875000~~chr21:15275000-15300000,
chr21:14850000-14875000~~chr21:15325000-15350000,
chr21:14850000-14875000~~chr21:15450000-15475000,
chr21:14850000-14875000~~chr21:15475000-15500000,
chr21:14850000-14875000~~chr21:15525000-15550000,
chr21:14850000-14875000~~chr21:15550000-15575000,
chr21:14850000-14875000~~chr21:15575000-15600000,
chr21:14861967-14865695~~chr21:15482166-15484539,
chr21:14862143-14865717~~chr21:15482133-15484467,
chr21:14862143-14865717~~chr21:15591261-15593479,
chr21:14862176-14863748~~chr21:15591419-15593481,
chr21:14862210-14865573~~chr21:15482197-15484441,
chr21:14862220-14865605~~chr21:15064456-15067091,
chr21:14862220-14865605~~chr21:15482170-15484279,
chr21:14862220-14865605~~chr21:15552361-15554051,
chr21:14862220-14865605~~chr21:15591129-15593459,
chr21:14862238-14865539~~chr21:15482380-15484257,
chr21:14862238-14865539~~chr21:15552463-15554046,
chr21:14862238-14865539~~chr21:15591782-15593428,
chr21:14862240-14865713~~chr21:15062575-15066369,
chr21:14862240-14865713~~chr21:15482132-15484427,
chr21:14862240-14865713~~chr21:15591212-15593889,
chr21:14862269-14865635~~chr21:15064553-15067078,
chr21:14862269-14865635~~chr21:15482421-15484340,
chr21:14862269-14865635~~chr21:15591267-15593870,
chr21:14862372-14863683~~chr21:15591578-15593280,
chr21:14862419-14865705~~chr21:15482148-15484288,
chr21:14862419-14865705~~chr21:15591086-15593455,
chr21:14862528-14865734~~chr21:15064383-15066714,
chr21:14862528-14865734~~chr21:15482191-15484318,
chr21:14862528-14865734~~chr21:15552331-15554281,
chr21:14862528-14865734~~chr21:15591183-15593405,