- Basic information
- CohesinDB ID: CDBP00413355
- Locus: chr21-14900078-14901068
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Data sourse: GSE206145, GSE206145-NatGen2015, GSE135093, ENCSR153HNT, GSE68388
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Cell type: RPE, Fibroblast, IMR-90, K-562, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 78%,
"7_Enh": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, ZNF660, HNF1A, FOXA1, MLL4, ATF3, NFIC, RUNX3, CBFB, CDX2, MAF, TEAD1, BCLAF1, ZNF26, SNAI2, NFE2L2, KLF6, ESR1, HNF1B, TP73, OCA2, JUN, TCF12, EP300, DPF2, IRF4, TEAD4, EED, POU2F2, STAT1, SRF, HOXC5, PAX6, ETS1, MYC, SMARCA4, RAD21, LHX2, GRHL3, PROX1, NKX2-1, RXRA, GABPA, STAT3, IKZF1, RCOR1, NFE2, ZNF285, ARNTL, NR3C1, CEBPB, VDR, STAT5B, KMT2A, ZHX2, SPI1, IRF1, HDAC2, GATA2, ZNF644, SIX2, RELB, RUNX1, CTNNB1, NKX2-2, EZH2phosphoT487, SIN3A, ZFX, AFF4, SMAD3, TRIM22, SMARCC1, RUNX2, CDK6, GATA4, OSR2, PBX4, DAXX, ARNT, ATF2, ETV6, MAFB, FOS, CDK8, MED1, ZEB1, NR1H2, C11orf30, MAFK, NIPBL, SP1, BCL11A, HNF4A, ATF7, PHIP, PPARG, CBX3, CREM, GTF2B, TCF7, HOXB13, RELA, JUNB, TCF4, HIF1A, OTX2, BATF, TAL1, MAX, KLF4, SP7, GFI1B, TCF7L2, NEUROG2, TP53, NFKB1, MYOD1, ELF3, T, BRD2, BHLHE40, PAX3-FOXO1, AR, YAP1, RXR, ZNF366, HSF1, IKZF2, BRD4, JUND, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000180530,
- Related loop:
chr21:14875000-14900000~~chr21:14975000-15000000,
chr21:14875000-14900000~~chr21:15000000-15025000,
chr21:14875000-14900000~~chr21:15025000-15050000,
chr21:14875000-14900000~~chr21:15050000-15075000,
chr21:14875000-14900000~~chr21:15150000-15175000,
chr21:14875000-14900000~~chr21:15200000-15225000,
chr21:14875000-14900000~~chr21:15225000-15250000,
chr21:14875000-14900000~~chr21:15275000-15300000,
chr21:14875000-14900000~~chr21:15450000-15475000,
chr21:14875000-14900000~~chr21:15475000-15500000,
chr21:14875000-14900000~~chr21:15725000-15750000,
chr21:14875000-14900000~~chr21:16775000-16800000,
chr21:14875000-14900000~~chr21:27500000-27525000,
chr21:14900000-14925000~~chr21:15050000-15075000,