- Basic information
- CohesinDB ID: CDBP00413358
- Locus: chr21-14911249-14912416
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Data sourse: ENCSR000BLD, ENCSR000BTQ, GSE206145-GSE177045, GSE72082, GSE86191, GSE111913, ENCSR054FKH, ENCSR153HNT, GSE68388, ENCSR703TNG, GSE25021
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Cell type: MCF-7, H1-hESC, HCT-116, Hep-G2, RT-112, K-562, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 75%,
"7_Enh": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, ZSCAN5D, FOXA2, ZFX, SMAD3, FOXA1, ZNF563, RELA, CREBBP, RUNX2, HOMEZ, RAD21, PBX4, HIF1A, ARNT, NKX2-1, SMC3, STAT3, ZNF143, ZNF667, MED1, ARNTL, ESRRA, TEAD1, ZNF217, ZNF687, ESR1, GRHL2, JUN, RBM22, CTCF, MNT, AR, IRF1, YAP1, GATA2, ZNF644, ZBTB26, BRD4, TEAD4, FOXA3, TFAP2C
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops