- Basic information
- CohesinDB ID: CDBP00413359
- Locus: chr21-14913610-14913946
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Data sourse: GSE206145-GSE177045
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 88%,
"5_TxWk": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, FOXA2, SIN3A, CTBP1, SMAD3, FOXA1, HOXB13, ERG, RELA, MYC, GATA4, RFX1, TOP1, PBX4, HIF1A, NKX2-1, GATA3, GABPA, STAT3, MAX, NKX3-1, HAND2, TLE3, NR3C1, ZNF750, KLF4, TEAD1, NR2F2, ELF1, CREB1, PIAS1, ESR1, GRHL2, TRPS1, PHOX2B, ELF3, T, BAF155, SPI1, AR, HDAC2, GATA2, YAP1, ASH2L, BRD4, CTBP2, FOXP1, E2F1, TEAD4, TBX2
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops