- Basic information
- CohesinDB ID: CDBP00413362
- Locus: chr21-14918481-14918803
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Data sourse: GSE116344, GSE83726, GSE206145-NatGen2015, GSE68388
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Cell type: Fibroblast, RH4, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21,SA2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 82%,
"1_TssA": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, PPARG, FOXA2, NKX2-2, EZH2phosphoT487, POU5F1, SOX2, ZNF316, HDAC1, TOP2A, MTA2, FOXA1, PBX2, HOXB13, TWIST1, ERG, YY1, RELA, KDM1A, ZNF384, ASCL1, NEUROD1, JUNB, RUNX2, MYC, SMARCA4, RFX1, RAD21, ARNT, HIF1A, RXRA, OTX2, ZEB2, MAX, MAFB, NKX3-1, FOXJ2, IKZF1, NFE2, MED1, NR3C1, CEBPB, MYOG, ZEB1, NCOA3, TEAD1, NEUROG2, ZMYM3, NFE2L2, ESR1, PKNOX1, C11orf30, MYOD1, CTCF, SPI1, SP1, HNF4A, AR, GATA2, HOXA9, BRD4, TCF3, AHR
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops