- Basic information
- CohesinDB ID: CDBP00413364
- Locus: chr21-14923415-14924002
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Data sourse: GSE206145-NatGen2015, GSE165895
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Cell type: Fibroblast, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
47% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 88%,
"7_Enh": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PAX7, PGR, MAFG, PPARG, CEBPA, MAFF, FOXA1, HOXB13, ERG, RELA, MYC, LHX2, GRHL3, PBX4, RXRA, OTX2, GABPA, TAL1, MED1, NR3C1, CEBPB, NR2F2, C11orf30, PHOX2B, MAFK, SP1, AR, BRD4, JUND, NR1H3, ZNF316
- Target gene symbol (double-evidenced CRMs): NRIP1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops